J5_8QFD_003
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8QFD|1|5|G|3620, 8QFD|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QFD_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1023
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QFD|1|5|G|2847
8QFD|1|5|C|2848
8QFD|1|5|A|2849
8QFD|1|5|A|2850
8QFD|1|5|G|2851
8QFD|1|5|C|2852
8QFD|1|5|C|2853
8QFD|1|5|G|2854
8QFD|1|5|G|2855
*
8QFD|1|5|U|2879
8QFD|1|5|G|2880
*
8QFD|1|5|U|3613
8QFD|1|5|G|3614
*
8QFD|1|5|C|3618
8QFD|1|5|G|3619
8QFD|1|5|G|3620
8QFD|1|5|A|3621
8QFD|1|5|C|3622
8QFD|1|5|C|3623
8QFD|1|5|A|3624
8QFD|1|5|G|3625
8QFD|1|5|G|3626
*
8QFD|1|5|C|3835
8QFD|1|5|A|3836
8QFD|1|5|C|3837
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L19
- Chain V
- 60S ribosomal protein L23
- Chain W
- 60S ribosomal protein L24
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