J5_8QK7_008

3D structure

PDB id

8QK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UAA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8QK7_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0479

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8QK7|1|2|C|36
8QK7|1|2|U|37
8QK7|1|2|G|38
8QK7|1|2|G|39
*
8QK7|1|2|C|403
8QK7|1|2|G|404
8QK7|1|2|U|405
8QK7|1|2|G|406
*
8QK7|1|2|C|436
8QK7|1|2|U|437
8QK7|1|2|U|438
8QK7|1|2|U|439
8QK7|1|2|C|440
8QK7|1|2|A|441
8QK7|1|2|G|442
*
8QK7|1|2|C|492
8QK7|1|2|A|493
8QK7|1|2|G|494
8QK7|1|2|A|495
8QK7|1|2|A|496
8QK7|1|2|G|497
8QK7|1|2|A|498
8QK7|1|2|A|499
8QK7|1|2|G|500
*
8QK7|1|2|C|545
8QK7|1|2|A|546
8QK7|1|2|A|547
8QK7|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4

Chain q

Small ribosomal subunit protein uS12