J5_8QOI_004
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8QOI|1|L5|A|3908, 8QOI|1|L5|A|4394, 8QOI|1|L5|U|4555, 8QOI|1|L5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QOI|1|L5|A|3903
8QOI|1|L5|G|3904
8QOI|1|L5|A|3905
8QOI|1|L5|A|3906
8QOI|1|L5|G|3907
8QOI|1|L5|A|3908
8QOI|1|L5|C|3909
8QOI|1|L5|C|3910
*
8QOI|1|L5|OMG|4392
8QOI|1|L5|G|4393
8QOI|1|L5|A|4394
8QOI|1|L5|U|4395
8QOI|1|L5|A|4396
8QOI|1|L5|A|4397
8QOI|1|L5|C|4398
8QOI|1|L5|U|4399
8QOI|1|L5|G|4400
*
8QOI|1|L5|C|4444
8QOI|1|L5|U|4445
8QOI|1|L5|U|4446
8QOI|1|L5|5MC|4447
8QOI|1|L5|G|4448
8QOI|1|L5|A|4449
8QOI|1|L5|U|4450
8QOI|1|L5|G|4451
8QOI|1|L5|U|4452
8QOI|1|L5|C|4453
*
8QOI|1|L5|G|4528
8QOI|1|L5|G|4529
8QOI|1|L5|UR3|4530
8QOI|1|L5|U|4531
8QOI|1|L5|PSU|4532
8QOI|1|L5|A|4533
8QOI|1|L5|G|4534
*
8QOI|1|L5|PSU|4552
8QOI|1|L5|A|4553
8QOI|1|L5|G|4554
8QOI|1|L5|U|4555
8QOI|1|L5|U|4556
8QOI|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LI
- 60S ribosomal protein L10-like
- Chain LP
- 60S ribosomal protein L17
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- 60S ribosomal protein L29
Coloring options: