J5_8QOI_009

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8QOI|1|S2|G|126, 8QOI|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|G|123
8QOI|1|S2|U|124
8QOI|1|S2|C|125
8QOI|1|S2|G|126
8QOI|1|S2|C|127
8QOI|1|S2|U|128
8QOI|1|S2|C|129
*
8QOI|1|S2|G|183
8QOI|1|S2|G|184
8QOI|1|S2|G|185
*
8QOI|1|S2|U|214
8QOI|1|S2|G|215
*
8QOI|1|S2|C|310
8QOI|1|S2|C|311
8QOI|1|S2|G|312
*
8QOI|1|S2|C|337
8QOI|1|S2|G|338
8QOI|1|S2|A|339
8QOI|1|S2|C|340
8QOI|1|S2|C|341

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8