J5_8QPP_006
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8QPP|1|X|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QPP_006 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1077
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QPP|1|X|C|628
8QPP|1|X|G|629
8QPP|1|X|A|630
8QPP|1|X|G|631
8QPP|1|X|U|632
8QPP|1|X|U|633
*
8QPP|1|X|A|715
8QPP|1|X|G|716
8QPP|1|X|A|717
8QPP|1|X|C|718
*
8QPP|1|X|G|856
8QPP|1|X|U|857
8QPP|1|X|U|858
8QPP|1|X|C|859
*
8QPP|1|X|G|1236
8QPP|1|X|C|1237
*
8QPP|1|X|G|1290
8QPP|1|X|A|1291
8QPP|1|X|G|1292
8QPP|1|X|A|1293
8QPP|1|X|A|1294
8QPP|1|X|U|1295
8QPP|1|X|G|1296
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain b
- Large ribosomal subunit protein uL4
- Chain i
- 50S ribosomal protein L15
- Chain n
- Large ribosomal subunit protein bL20
- Chain o
- Large ribosomal subunit protein bL21
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