J5_8R8M_001
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8R8M_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.0542
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8R8M|1|A|C|36
8R8M|1|A|U|37
8R8M|1|A|G|38
8R8M|1|A|G|39
*
8R8M|1|A|C|403
8R8M|1|A|G|404
8R8M|1|A|U|405
8R8M|1|A|G|406
*
8R8M|1|A|C|436
8R8M|1|A|U|437
8R8M|1|A|U|438
8R8M|1|A|U|439
8R8M|1|A|C|440
*
8R8M|1|A|G|497
8R8M|1|A|A|498
8R8M|1|A|A|499
8R8M|1|A|G|500
*
8R8M|1|A|C|545
8R8M|1|A|A|546
8R8M|1|A|A|547
8R8M|1|A|G|548
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: