J5_8R8M_004

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8R8M|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8R8M_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0344

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8R8M|1|a|C|47
8R8M|1|a|G|48
8R8M|1|a|A|49
8R8M|1|a|U|50
8R8M|1|a|G|51
8R8M|1|a|A|52
8R8M|1|a|A|53
8R8M|1|a|G|54
*
8R8M|1|a|C|116
8R8M|1|a|G|117
8R8M|1|a|A|118
8R8M|1|a|A|119
8R8M|1|a|U|120
8R8M|1|a|G|121
*
8R8M|1|a|C|130
8R8M|1|a|A|131
*
8R8M|1|a|U|148
8R8M|1|a|A|149
8R8M|1|a|U|150
*
8R8M|1|a|A|176
8R8M|1|a|G|177
8R8M|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34