J5_8RCL_001

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8RCL|1|72|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCL_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0664

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RCL|1|72|C|47
8RCL|1|72|G|48
8RCL|1|72|A|49
8RCL|1|72|U|50
8RCL|1|72|G|51
8RCL|1|72|A|52
8RCL|1|72|A|53
8RCL|1|72|G|54
*
8RCL|1|72|C|116
8RCL|1|72|G|117
8RCL|1|72|A|118
8RCL|1|72|A|119
8RCL|1|72|U|120
8RCL|1|72|G|121
*
8RCL|1|72|C|130
8RCL|1|72|A|131
*
8RCL|1|72|U|148
8RCL|1|72|A|149
8RCL|1|72|U|150
*
8RCL|1|72|A|176
8RCL|1|72|G|177
8RCL|1|72|G|178

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34