J5_8RCL_008
3D structure
- PDB id
- 8RCL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (Non-rotated disome interface class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RCL_008 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0943
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8RCL|1|A1|C|36
8RCL|1|A1|U|37
8RCL|1|A1|G|38
8RCL|1|A1|G|39
*
8RCL|1|A1|C|403
8RCL|1|A1|G|404
8RCL|1|A1|U|405
8RCL|1|A1|G|406
*
8RCL|1|A1|C|436
8RCL|1|A1|U|437
8RCL|1|A1|U|438
8RCL|1|A1|U|439
8RCL|1|A1|C|440
8RCL|1|A1|A|441
8RCL|1|A1|G|442
*
8RCL|1|A1|C|492
8RCL|1|A1|A|493
8RCL|1|A1|G|494
8RCL|1|A1|A|495
8RCL|1|A1|A|496
8RCL|1|A1|G|497
8RCL|1|A1|A|498
8RCL|1|A1|A|499
8RCL|1|A1|G|500
*
8RCL|1|A1|C|545
8RCL|1|A1|A|546
8RCL|1|A1|A|547
8RCL|1|A1|G|548
Current chains
- Chain A1
- 16S ribosomal RNA
Nearby chains
- Chain D1
- Small ribosomal subunit protein uS4
- Chain L1
- Small ribosomal subunit protein uS12
Coloring options: