3D structure

PDB id
8RCL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.49 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8RCL|1|A1|A|109, 8RCL|1|A1|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8RCL_009 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.1061
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8RCL|1|A1|C|58
8RCL|1|A1|A|59
8RCL|1|A1|A|60
8RCL|1|A1|G|61
*
8RCL|1|A1|C|106
8RCL|1|A1|G|107
8RCL|1|A1|G|108
8RCL|1|A1|A|109
8RCL|1|A1|C|110
8RCL|1|A1|G|111
8RCL|1|A1|G|112
8RCL|1|A1|G|113
*
8RCL|1|A1|C|314
8RCL|1|A1|A|315
8RCL|1|A1|C|316
*
8RCL|1|A1|G|337
8RCL|1|A1|A|338
8RCL|1|A1|C|339
*
8RCL|1|A1|G|350
8RCL|1|A1|G|351
8RCL|1|A1|C|352
8RCL|1|A1|A|353
8RCL|1|A1|G|354

Current chains

Chain A1
16S ribosomal RNA

Nearby chains

Chain P1
30S ribosomal protein S16
Chain T1
Small ribosomal subunit protein bS20
Chain i2
50S ribosomal protein L9

Coloring options:


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