J5_8RCL_011

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8RCL|1|A2|A|109, 8RCL|1|A2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCL_011 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.1133

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8RCL|1|A2|C|58
8RCL|1|A2|A|59
8RCL|1|A2|A|60
8RCL|1|A2|G|61
*
8RCL|1|A2|C|106
8RCL|1|A2|G|107
8RCL|1|A2|G|108
8RCL|1|A2|A|109
8RCL|1|A2|C|110
8RCL|1|A2|G|111
8RCL|1|A2|G|112
8RCL|1|A2|G|113
*
8RCL|1|A2|C|314
8RCL|1|A2|A|315
8RCL|1|A2|C|316
*
8RCL|1|A2|G|337
8RCL|1|A2|A|338
8RCL|1|A2|C|339
*
8RCL|1|A2|G|350
8RCL|1|A2|G|351
8RCL|1|A2|C|352
8RCL|1|A2|A|353
8RCL|1|A2|G|354

Current chains

Chain A2

16S ribosomal RNA

Nearby chains