J5_8RCM_005

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8RCM|1|72|A|2062, 8RCM|1|72|A|2448, 8RCM|1|72|H2U|2449, 8RCM|1|72|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RCM|1|72|G|2057
8RCM|1|72|A|2058
8RCM|1|72|A|2059
8RCM|1|72|A|2060
8RCM|1|72|G|2061
8RCM|1|72|A|2062
8RCM|1|72|C|2063
8RCM|1|72|C|2064
*
8RCM|1|72|G|2446
8RCM|1|72|G|2447
8RCM|1|72|A|2448
8RCM|1|72|H2U|2449
8RCM|1|72|A|2450
8RCM|1|72|A|2451
8RCM|1|72|C|2452
8RCM|1|72|A|2453
*
8RCM|1|72|U|2500
8RCM|1|72|C|2501
8RCM|1|72|G|2502
8RCM|1|72|2MA|2503
8RCM|1|72|PSU|2504
8RCM|1|72|G|2505
8RCM|1|72|U|2506
8RCM|1|72|C|2507
*
8RCM|1|72|G|2582
8RCM|1|72|G|2583
8RCM|1|72|U|2584
8RCM|1|72|U|2585
8RCM|1|72|U|2586
8RCM|1|72|A|2587
8RCM|1|72|G|2588
*
8RCM|1|72|C|2606
8RCM|1|72|G|2607
8RCM|1|72|G|2608
8RCM|1|72|U|2609
8RCM|1|72|C|2610
8RCM|1|72|C|2611

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain Y2

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2

Chain h2

50S ribosomal protein L16

Chain p

Nascent chain