J5_8RCS_005

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8RCS|1|72|A|2062, 8RCS|1|72|A|2448, 8RCS|1|72|H2U|2449, 8RCS|1|72|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RCS|1|72|G|2057
8RCS|1|72|A|2058
8RCS|1|72|A|2059
8RCS|1|72|A|2060
8RCS|1|72|G|2061
8RCS|1|72|A|2062
8RCS|1|72|C|2063
8RCS|1|72|C|2064
*
8RCS|1|72|G|2446
8RCS|1|72|G|2447
8RCS|1|72|A|2448
8RCS|1|72|H2U|2449
8RCS|1|72|A|2450
8RCS|1|72|A|2451
8RCS|1|72|C|2452
8RCS|1|72|A|2453
*
8RCS|1|72|U|2500
8RCS|1|72|C|2501
8RCS|1|72|G|2502
8RCS|1|72|2MA|2503
8RCS|1|72|PSU|2504
8RCS|1|72|G|2505
8RCS|1|72|U|2506
8RCS|1|72|C|2507
*
8RCS|1|72|G|2582
8RCS|1|72|G|2583
8RCS|1|72|U|2584
8RCS|1|72|U|2585
8RCS|1|72|U|2586
8RCS|1|72|A|2587
8RCS|1|72|G|2588
*
8RCS|1|72|C|2606
8RCS|1|72|G|2607
8RCS|1|72|G|2608
8RCS|1|72|U|2609
8RCS|1|72|C|2610
8RCS|1|72|C|2611

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2

Chain h2

50S ribosomal protein L16

Chain o2

50S ribosomal protein L15

Chain p

Nascent chain