J5_8RCT_001

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8RCT|1|72|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCT_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0711

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RCT|1|72|C|47
8RCT|1|72|G|48
8RCT|1|72|A|49
8RCT|1|72|U|50
8RCT|1|72|G|51
8RCT|1|72|A|52
8RCT|1|72|A|53
8RCT|1|72|G|54
*
8RCT|1|72|C|116
8RCT|1|72|G|117
8RCT|1|72|A|118
8RCT|1|72|A|119
8RCT|1|72|U|120
8RCT|1|72|G|121
*
8RCT|1|72|C|130
8RCT|1|72|A|131
*
8RCT|1|72|U|148
8RCT|1|72|A|149
8RCT|1|72|U|150
*
8RCT|1|72|A|176
8RCT|1|72|G|177
8RCT|1|72|G|178

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain l2

50S ribosomal protein L34