J5_8RCT_005

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

8RCT|1|72|A|2062, 8RCT|1|72|A|2448, 8RCT|1|72|H2U|2449, 8RCT|1|72|U|2506, 8RCT|1|72|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RCT|1|72|G|2057
8RCT|1|72|A|2058
8RCT|1|72|A|2059
8RCT|1|72|A|2060
8RCT|1|72|G|2061
8RCT|1|72|A|2062
8RCT|1|72|C|2063
8RCT|1|72|C|2064
*
8RCT|1|72|G|2446
8RCT|1|72|G|2447
8RCT|1|72|A|2448
8RCT|1|72|H2U|2449
8RCT|1|72|A|2450
8RCT|1|72|A|2451
8RCT|1|72|C|2452
8RCT|1|72|A|2453
*
8RCT|1|72|U|2500
8RCT|1|72|C|2501
8RCT|1|72|G|2502
8RCT|1|72|2MA|2503
8RCT|1|72|PSU|2504
8RCT|1|72|G|2505
8RCT|1|72|U|2506
8RCT|1|72|C|2507
*
8RCT|1|72|G|2582
8RCT|1|72|G|2583
8RCT|1|72|U|2584
8RCT|1|72|U|2585
8RCT|1|72|U|2586
8RCT|1|72|A|2587
8RCT|1|72|G|2588
*
8RCT|1|72|C|2606
8RCT|1|72|G|2607
8RCT|1|72|G|2608
8RCT|1|72|U|2609
8RCT|1|72|C|2610
8RCT|1|72|C|2611

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2

Chain h2

50S ribosomal protein L16

Chain o2

50S ribosomal protein L15

Chain p

Nascent chain