J5_8RCT_011

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8RCT|1|A2|A|109, 8RCT|1|A2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCT_011 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.1177

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8RCT|1|A2|C|58
8RCT|1|A2|A|59
8RCT|1|A2|A|60
8RCT|1|A2|G|61
*
8RCT|1|A2|C|106
8RCT|1|A2|G|107
8RCT|1|A2|G|108
8RCT|1|A2|A|109
8RCT|1|A2|C|110
8RCT|1|A2|G|111
8RCT|1|A2|G|112
8RCT|1|A2|G|113
*
8RCT|1|A2|C|314
8RCT|1|A2|A|315
8RCT|1|A2|C|316
*
8RCT|1|A2|G|337
8RCT|1|A2|A|338
8RCT|1|A2|C|339
*
8RCT|1|A2|G|350
8RCT|1|A2|G|351
8RCT|1|A2|C|352
8RCT|1|A2|A|353
8RCT|1|A2|G|354

Current chains

Chain A2

16S ribosomal RNA

Nearby chains