J5_8RD8_005
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|2048, 8RD8|1|Z2|A|2431, 8RD8|1|Z2|U|2432, 8RD8|1|Z2|U|2592
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RD8|1|Z2|G|2043
8RD8|1|Z2|A|2044
8RD8|1|Z2|A|2045
8RD8|1|Z2|A|2046
8RD8|1|Z2|G|2047
8RD8|1|Z2|A|2048
8RD8|1|Z2|C|2049
8RD8|1|Z2|C|2050
*
8RD8|1|Z2|G|2429
8RD8|1|Z2|G|2430
8RD8|1|Z2|A|2431
8RD8|1|Z2|U|2432
8RD8|1|Z2|A|2433
8RD8|1|Z2|A|2434
8RD8|1|Z2|C|2435
8RD8|1|Z2|A|2436
*
8RD8|1|Z2|U|2483
8RD8|1|Z2|C|2484
8RD8|1|Z2|G|2485
8RD8|1|Z2|A|2486
8RD8|1|Z2|U|2487
8RD8|1|Z2|G|2488
8RD8|1|Z2|U|2489
*
8RD8|1|Z2|G|2566
8RD8|1|Z2|U|2567
8RD8|1|Z2|U|2568
8RD8|1|Z2|U|2569
8RD8|1|Z2|A|2570
8RD8|1|Z2|G|2571
*
8RD8|1|Z2|C|2589
8RD8|1|Z2|G|2590
8RD8|1|Z2|G|2591
8RD8|1|Z2|U|2592
8RD8|1|Z2|C|2593
8RD8|1|Z2|C|2594
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain B
- Methyl-accepting chemotaxis protein
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: