J5_8RD8_008
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUGG*CGUG*CUUUAAG*CAGAAUAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RD8_008 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0669
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8RD8|1|iN|C|83
8RD8|1|iN|U|84
8RD8|1|iN|G|85
8RD8|1|iN|G|86
*
8RD8|1|iN|C|446
8RD8|1|iN|G|447
8RD8|1|iN|U|448
8RD8|1|iN|G|449
*
8RD8|1|iN|C|479
8RD8|1|iN|U|480
8RD8|1|iN|U|481
8RD8|1|iN|U|482
8RD8|1|iN|A|483
8RD8|1|iN|A|484
8RD8|1|iN|G|485
*
8RD8|1|iN|C|535
8RD8|1|iN|A|536
8RD8|1|iN|G|537
8RD8|1|iN|A|538
8RD8|1|iN|A|539
8RD8|1|iN|U|540
8RD8|1|iN|A|541
8RD8|1|iN|A|542
8RD8|1|iN|G|543
*
8RD8|1|iN|C|588
8RD8|1|iN|A|589
8RD8|1|iN|A|590
8RD8|1|iN|G|591
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Dm
- Small ribosomal subunit protein uS4
- Chain L6
- Small ribosomal subunit protein uS12
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