J5_8RD8_009
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8RD8|1|iN|A|154, 8RD8|1|iN|C|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RD8_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.108
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|iN|C|105
8RD8|1|iN|A|106
8RD8|1|iN|A|107
8RD8|1|iN|G|108
*
8RD8|1|iN|C|151
8RD8|1|iN|G|152
8RD8|1|iN|G|153
8RD8|1|iN|A|154
8RD8|1|iN|C|155
8RD8|1|iN|G|156
8RD8|1|iN|G|157
8RD8|1|iN|G|158
*
8RD8|1|iN|C|357
8RD8|1|iN|A|358
8RD8|1|iN|C|359
*
8RD8|1|iN|G|380
8RD8|1|iN|A|381
8RD8|1|iN|C|382
*
8RD8|1|iN|G|393
8RD8|1|iN|G|394
8RD8|1|iN|C|395
8RD8|1|iN|A|396
8RD8|1|iN|G|397
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Je
- Large ribosomal subunit protein uL14
- Chain Pj
- Small ribosomal subunit protein bS16
- Chain To
- Small ribosomal subunit protein bS20
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