J5_8RJD_004
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8RJD|1|K|A|4394, 8RJD|1|K|G|4451, 8RJD|1|K|U|4555, 8RJD|1|K|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|A|3903
8RJD|1|K|G|3904
8RJD|1|K|A|3905
8RJD|1|K|A|3906
8RJD|1|K|G|3907
8RJD|1|K|A|3908
8RJD|1|K|C|3909
8RJD|1|K|C|3910
*
8RJD|1|K|G|4392
8RJD|1|K|G|4393
8RJD|1|K|A|4394
8RJD|1|K|U|4395
8RJD|1|K|A|4396
8RJD|1|K|A|4397
8RJD|1|K|C|4398
8RJD|1|K|U|4399
8RJD|1|K|G|4400
*
8RJD|1|K|C|4444
8RJD|1|K|U|4445
8RJD|1|K|U|4446
8RJD|1|K|C|4447
8RJD|1|K|G|4448
8RJD|1|K|A|4449
8RJD|1|K|U|4450
8RJD|1|K|G|4451
8RJD|1|K|U|4452
8RJD|1|K|C|4453
*
8RJD|1|K|G|4528
8RJD|1|K|G|4529
8RJD|1|K|U|4530
8RJD|1|K|U|4531
8RJD|1|K|U|4532
8RJD|1|K|A|4533
8RJD|1|K|G|4534
*
8RJD|1|K|U|4552
8RJD|1|K|A|4553
8RJD|1|K|G|4554
8RJD|1|K|U|4555
8RJD|1|K|U|4556
8RJD|1|K|U|4557
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- Nascent chain
- Chain C
- Large ribosomal subunit protein uL4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain q
- Transfer RNA; tRNA
- Chain w
- Ribosomal protein L3
Coloring options: