J5_8RPY_001

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8RPY|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RPY_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0629

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RPY|1|A|C|47
8RPY|1|A|G|48
8RPY|1|A|A|49
8RPY|1|A|U|50
8RPY|1|A|G|51
8RPY|1|A|A|52
8RPY|1|A|A|53
8RPY|1|A|G|54
*
8RPY|1|A|C|116
8RPY|1|A|G|117
8RPY|1|A|A|118
8RPY|1|A|A|119
8RPY|1|A|U|120
8RPY|1|A|G|121
*
8RPY|1|A|C|130
8RPY|1|A|A|131
*
8RPY|1|A|U|148
8RPY|1|A|A|149
8RPY|1|A|U|150
*
8RPY|1|A|A|176
8RPY|1|A|G|177
8RPY|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34