J5_8RPY_005
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8RPY|1|A|A|2448, 8RPY|1|A|U|2506||A, 8RPY|1|A|U|2585, 8RPY|1|A|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RPY|1|A|G|2057
8RPY|1|A|A|2058
8RPY|1|A|A|2059
8RPY|1|A|A|2060
8RPY|1|A|G|2061
8RPY|1|A|A|2062
8RPY|1|A|C|2063
8RPY|1|A|C|2064
*
8RPY|1|A|G|2446
8RPY|1|A|G|2447
8RPY|1|A|A|2448
8RPY|1|A|U|2449
8RPY|1|A|A|2450
8RPY|1|A|A|2451
8RPY|1|A|C|2452
8RPY|1|A|A|2453
*
8RPY|1|A|U|2500
8RPY|1|A|C|2501
8RPY|1|A|G|2502
8RPY|1|A|A|2503
8RPY|1|A|U|2504
8RPY|1|A|G|2505
8RPY|1|A|U|2506||A
8RPY|1|A|C|2507
*
8RPY|1|A|G|2582
8RPY|1|A|G|2583
8RPY|1|A|U|2584
8RPY|1|A|U|2585
8RPY|1|A|U|2586
8RPY|1|A|A|2587
8RPY|1|A|G|2588
*
8RPY|1|A|C|2606
8RPY|1|A|G|2607
8RPY|1|A|G|2608
8RPY|1|A|U|2609
8RPY|1|A|C|2610
8RPY|1|A|C|2611
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- Large ribosomal subunit protein uL3
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein uL15
- Chain M
- Large ribosomal subunit protein uL16
- Chain S
- Large ribosomal subunit protein uL22
- Chain z
- Apidaecins type 137
Coloring options: