J5_8RPZ_001

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8RPZ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RPZ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0757

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RPZ|1|A|C|47
8RPZ|1|A|G|48
8RPZ|1|A|A|49
8RPZ|1|A|U|50
8RPZ|1|A|G|51
8RPZ|1|A|A|52
8RPZ|1|A|A|53
8RPZ|1|A|G|54
*
8RPZ|1|A|C|116
8RPZ|1|A|G|117
8RPZ|1|A|A|118
8RPZ|1|A|A|119
8RPZ|1|A|U|120
8RPZ|1|A|G|121
*
8RPZ|1|A|C|130
8RPZ|1|A|A|131
*
8RPZ|1|A|U|148
8RPZ|1|A|A|149
8RPZ|1|A|U|150
*
8RPZ|1|A|A|176
8RPZ|1|A|G|177
8RPZ|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain x

Apidaecins type 88