J5_8RUK_001

3D structure

PDB id

8RUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850

Experimental method

X-RAY DIFFRACTION

Resolution

4.81 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

8RUK|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RUK|1|A|U|24
8RUK|1|A|A|25
8RUK|1|A|U|26
8RUK|1|A|A|27
8RUK|1|A|G|28
*
8RUK|1|A|C|40
8RUK|1|A|G|41
8RUK|1|A|A|42
8RUK|1|A|A|43
*
8RUK|1|A|U|65
8RUK|1|A|U|66
8RUK|1|A|A|67
8RUK|1|A|G|68
*
8RUK|1|A|C|119
8RUK|1|A|A|120
8RUK|1|A|A|121
8RUK|1|A|A|122
8RUK|1|A|C|123
*
8RUK|1|A|G|243
8RUK|1|A|G|244
8RUK|1|A|A|245
8RUK|1|A|A|246
8RUK|1|A|A|247

Current chains

Chain A

Domains 1-5

Nearby chains