J5_8RUN_001

3D structure

PDB id

8RUN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and ARN25850

Experimental method

X-RAY DIFFRACTION

Resolution

3.73 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

8RUN|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RUN|1|A|U|24
8RUN|1|A|A|25
8RUN|1|A|U|26
8RUN|1|A|A|27
8RUN|1|A|G|28
*
8RUN|1|A|C|40
8RUN|1|A|G|41
8RUN|1|A|A|42
8RUN|1|A|A|43
*
8RUN|1|A|U|65
8RUN|1|A|U|66
8RUN|1|A|A|67
8RUN|1|A|G|68
*
8RUN|1|A|C|119
8RUN|1|A|A|120
8RUN|1|A|A|121
8RUN|1|A|A|122
8RUN|1|A|C|123
*
8RUN|1|A|G|243
8RUN|1|A|G|244
8RUN|1|A|A|245
8RUN|1|A|A|246
8RUN|1|A|A|247

Current chains

Chain A

Domains 1-5

Nearby chains