J5_8RW1_005

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUAGUUCCUUUACUACAU*AUGCUUAAAA*UG*CGAAU*AUGGUU

Length

41 nucleotides

Bulged bases

8RW1|1|2|U|128, 8RW1|1|2|C|131, 8RW1|1|2|U|132, 8RW1|1|2|U|134, 8RW1|1|2|A|135, 8RW1|1|2|C|136, 8RW1|1|2|C|139, 8RW1|1|2|A|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|A|124
8RW1|1|2|U|125
8RW1|1|2|A|126
8RW1|1|2|G|127
8RW1|1|2|U|128
8RW1|1|2|U|129
8RW1|1|2|C|130
8RW1|1|2|C|131
8RW1|1|2|U|132
8RW1|1|2|U|133
8RW1|1|2|U|134
8RW1|1|2|A|135
8RW1|1|2|C|136
8RW1|1|2|U|137
8RW1|1|2|A|138
8RW1|1|2|C|139
8RW1|1|2|A|140
8RW1|1|2|U|141
*
8RW1|1|2|A|172
8RW1|1|2|U|173
8RW1|1|2|G|174
8RW1|1|2|C|175
8RW1|1|2|U|176
8RW1|1|2|U|177
8RW1|1|2|A|178
8RW1|1|2|A|179
8RW1|1|2|A|180
8RW1|1|2|A|181
*
8RW1|1|2|U|202
8RW1|1|2|G|203
*
8RW1|1|2|C|262
8RW1|1|2|G|263
8RW1|1|2|A|264
8RW1|1|2|A|265
8RW1|1|2|U|266
*
8RW1|1|2|A|287
8RW1|1|2|U|288
8RW1|1|2|G|289
8RW1|1|2|G|290
8RW1|1|2|U|291
8RW1|1|2|U|292

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

Small ribosomal subunit protein eS6

Chain I

40S ribosomal protein S8