J5_8S8D_002

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAC*GUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8D|1|2|C|31
8S8D|1|2|U|32
8S8D|1|2|U|33
8S8D|1|2|G|34
8S8D|1|2|U|35
*
8S8D|1|2|A|472
8S8D|1|2|A|473
8S8D|1|2|A|474
8S8D|1|2|U|475
8S8D|1|2|A|476
8S8D|1|2|A|477
8S8D|1|2|C|478
*
8S8D|1|2|G|508
8S8D|1|2|G|509
8S8D|1|2|A|510
8S8D|1|2|A|511
8S8D|1|2|U|512
8S8D|1|2|G|513
8S8D|1|2|A|514
8S8D|1|2|G|515
*
8S8D|1|2|C|535
8S8D|1|2|G|536
8S8D|1|2|A|537
8S8D|1|2|G|538
8S8D|1|2|G|539
8S8D|1|2|A|540
8S8D|1|2|A|541
8S8D|1|2|C|542
8S8D|1|2|A|543
8S8D|1|2|A|544
8S8D|1|2|C|545
*
8S8D|1|2|G|591
8S8D|1|2|U|592
8S8D|1|2|A|593
8S8D|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain e

40S ribosomal protein S30