J5_8S8I_006

3D structure

PDB id

8S8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUGGAAUAGGACG*CGUAAUGAU

Length

41 nucleotides

Bulged bases

8S8I|1|2|U|637, 8S8I|1|2|C|696, 8S8I|1|2|C|697, 8S8I|1|2|U|812, 8S8I|1|2|G|814, 8S8I|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8I|1|2|A|635
8S8I|1|2|C|636
8S8I|1|2|U|637
8S8I|1|2|U|638
8S8I|1|2|U|639
8S8I|1|2|G|640
*
8S8I|1|2|U|693
8S8I|1|2|U|694
8S8I|1|2|U|695
8S8I|1|2|C|696
8S8I|1|2|C|697
8S8I|1|2|U|698
8S8I|1|2|U|699
*
8S8I|1|2|G|739
8S8I|1|2|A|740
8S8I|1|2|C|741
8S8I|1|2|U|742
8S8I|1|2|U|743
8S8I|1|2|U|744
*
8S8I|1|2|A|806
8S8I|1|2|U|807
8S8I|1|2|G|808
8S8I|1|2|G|809
8S8I|1|2|A|810
8S8I|1|2|A|811
8S8I|1|2|U|812
8S8I|1|2|A|813
8S8I|1|2|G|814
8S8I|1|2|G|815
8S8I|1|2|A|816
8S8I|1|2|C|817
8S8I|1|2|G|818
*
8S8I|1|2|C|851
8S8I|1|2|G|852
8S8I|1|2|U|853
8S8I|1|2|A|854
8S8I|1|2|A|855
8S8I|1|2|U|856
8S8I|1|2|G|857
8S8I|1|2|A|858
8S8I|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8