J5_8S8J_007

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GACUUU*AUGGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

8S8J|1|2|U|637, 8S8J|1|2|U|694, 8S8J|1|2|C|696, 8S8J|1|2|C|697, 8S8J|1|2|U|812, 8S8J|1|2|G|814, 8S8J|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8J|1|2|A|635
8S8J|1|2|C|636
8S8J|1|2|U|637
8S8J|1|2|U|638
8S8J|1|2|U|639
8S8J|1|2|G|640
8S8J|1|2|G|641
*
8S8J|1|2|C|692
8S8J|1|2|U|693
8S8J|1|2|U|694
8S8J|1|2|U|695
8S8J|1|2|C|696
8S8J|1|2|C|697
8S8J|1|2|U|698
8S8J|1|2|U|699
*
8S8J|1|2|G|739
8S8J|1|2|A|740
8S8J|1|2|C|741
8S8J|1|2|U|742
8S8J|1|2|U|743
8S8J|1|2|U|744
*
8S8J|1|2|A|806
8S8J|1|2|U|807
8S8J|1|2|G|808
8S8J|1|2|G|809
8S8J|1|2|A|810
8S8J|1|2|A|811
8S8J|1|2|U|812
8S8J|1|2|A|813
8S8J|1|2|G|814
8S8J|1|2|G|815
8S8J|1|2|A|816
*
8S8J|1|2|U|853
8S8J|1|2|A|854
8S8J|1|2|A|855
8S8J|1|2|U|856
8S8J|1|2|G|857
8S8J|1|2|A|858
8S8J|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8