J5_8S8K_006

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUUUGG*CUUUCCUUC*GGACUUU*AUGGAAUAGGA*UAAUGAU

Length

41 nucleotides

Bulged bases

8S8K|1|2|U|637, 8S8K|1|2|U|694, 8S8K|1|2|U|812, 8S8K|1|2|G|814, 8S8K|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8K|1|2|A|635
8S8K|1|2|C|636
8S8K|1|2|U|637
8S8K|1|2|U|638
8S8K|1|2|U|639
8S8K|1|2|G|640
8S8K|1|2|G|641
*
8S8K|1|2|C|692
8S8K|1|2|U|693
8S8K|1|2|U|694
8S8K|1|2|U|695
8S8K|1|2|C|696
8S8K|1|2|C|697
8S8K|1|2|U|698
8S8K|1|2|U|699
8S8K|1|2|C|700
*
8S8K|1|2|G|738
8S8K|1|2|G|739
8S8K|1|2|A|740
8S8K|1|2|C|741
8S8K|1|2|U|742
8S8K|1|2|U|743
8S8K|1|2|U|744
*
8S8K|1|2|A|806
8S8K|1|2|U|807
8S8K|1|2|G|808
8S8K|1|2|G|809
8S8K|1|2|A|810
8S8K|1|2|A|811
8S8K|1|2|U|812
8S8K|1|2|A|813
8S8K|1|2|G|814
8S8K|1|2|G|815
8S8K|1|2|A|816
*
8S8K|1|2|U|853
8S8K|1|2|A|854
8S8K|1|2|A|855
8S8K|1|2|U|856
8S8K|1|2|G|857
8S8K|1|2|A|858
8S8K|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8