J5_8SCB_004
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8SCB|1|5|A|4394, 8SCB|1|5|G|4451, 8SCB|1|5|U|4555, 8SCB|1|5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8SCB|1|5|A|3903
8SCB|1|5|G|3904
8SCB|1|5|A|3905
8SCB|1|5|A|3906
8SCB|1|5|G|3907
8SCB|1|5|A|3908
8SCB|1|5|C|3909
8SCB|1|5|C|3910
*
8SCB|1|5|OMG|4392
8SCB|1|5|G|4393
8SCB|1|5|A|4394
8SCB|1|5|U|4395
8SCB|1|5|A|4396
8SCB|1|5|A|4397
8SCB|1|5|C|4398
8SCB|1|5|U|4399
8SCB|1|5|G|4400
*
8SCB|1|5|C|4444
8SCB|1|5|U|4445
8SCB|1|5|U|4446
8SCB|1|5|5MC|4447
8SCB|1|5|G|4448
8SCB|1|5|A|4449
8SCB|1|5|U|4450
8SCB|1|5|G|4451
8SCB|1|5|U|4452
8SCB|1|5|C|4453
*
8SCB|1|5|G|4528
8SCB|1|5|G|4529
8SCB|1|5|UR3|4530
8SCB|1|5|U|4531
8SCB|1|5|PSU|4532
8SCB|1|5|A|4533
8SCB|1|5|G|4534
*
8SCB|1|5|PSU|4552
8SCB|1|5|A|4553
8SCB|1|5|G|4554
8SCB|1|5|U|4555
8SCB|1|5|U|4556
8SCB|1|5|U|4557
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain 1
- NC
- Chain 2
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain B
- Ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain b
- 60S ribosomal protein L29
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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