J5_8SUP_001

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8SUP|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|30
8SUP|1|2|U|31
8SUP|1|2|U|32
8SUP|1|2|G|33
8SUP|1|2|U|34
*
8SUP|1|2|A|521
8SUP|1|2|A|522
8SUP|1|2|A|523
8SUP|1|2|U|524
8SUP|1|2|A|525
8SUP|1|2|A|526
8SUP|1|2|C|527
*
8SUP|1|2|G|558
8SUP|1|2|G|559
8SUP|1|2|A|560
8SUP|1|2|A|561
8SUP|1|2|U|562
8SUP|1|2|G|563
*
8SUP|1|2|C|592
8SUP|1|2|C|593
8SUP|1|2|A|594
8SUP|1|2|U|595
*
8SUP|1|2|A|641
8SUP|1|2|U|642
8SUP|1|2|A|643
8SUP|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30