J5_8SUP_003

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

8SUP|1|2|U|55, 8SUP|1|2|A|92, 8SUP|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8SUP_003 not in the Motif Atlas

Homologous match to J5_9PN5_009

Geometric discrepancy: 0.0924

The information below is about J5_9PN5_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8SUP|1|2|C|53
8SUP|1|2|A|54
8SUP|1|2|U|55
8SUP|1|2|G|56
*
8SUP|1|2|C|89
8SUP|1|2|G|90
8SUP|1|2|A|91
8SUP|1|2|A|92
8SUP|1|2|U|93
8SUP|1|2|G|94
8SUP|1|2|G|95
8SUP|1|2|C|96
*
8SUP|1|2|G|434
8SUP|1|2|A|435
8SUP|1|2|G|436
*
8SUP|1|2|C|457
8SUP|1|2|A|458
8SUP|1|2|C|459
*
8SUP|1|2|G|470
8SUP|1|2|G|471
8SUP|1|2|C|472
8SUP|1|2|A|473
8SUP|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

eS24