J5_8SUP_004

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8SUP|1|2|G|126, 8SUP|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|123
8SUP|1|2|U|124
8SUP|1|2|C|125
8SUP|1|2|G|126
8SUP|1|2|C|127
8SUP|1|2|U|128
8SUP|1|2|C|129
*
8SUP|1|2|G|183
8SUP|1|2|G|184
8SUP|1|2|G|185
*
8SUP|1|2|U|214
8SUP|1|2|G|215
*
8SUP|1|2|C|310
8SUP|1|2|C|311
8SUP|1|2|G|312
*
8SUP|1|2|C|337
8SUP|1|2|G|338
8SUP|1|2|A|339
8SUP|1|2|C|340
8SUP|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8