J5_8SYL_009
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8SYL|1|a|A|109, 8SYL|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8SYL_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0975
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8SYL|1|a|C|58
8SYL|1|a|A|59
8SYL|1|a|A|60
8SYL|1|a|G|61
*
8SYL|1|a|C|106
8SYL|1|a|G|107
8SYL|1|a|G|108
8SYL|1|a|A|109
8SYL|1|a|C|110
8SYL|1|a|G|111
8SYL|1|a|G|112
8SYL|1|a|G|113
*
8SYL|1|a|C|314
8SYL|1|a|A|315
8SYL|1|a|C|316
*
8SYL|1|a|G|337
8SYL|1|a|A|338
8SYL|1|a|C|339
*
8SYL|1|a|G|350
8SYL|1|a|G|351
8SYL|1|a|C|352
8SYL|1|a|A|353
8SYL|1|a|G|354
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
- Chain R
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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