3D structure

PDB id
8T2X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
Experimental method
ELECTRON MICROSCOPY
Resolution
2.46 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
8T2X|1|A1|U|1436
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8T2X_002 not in the Motif Atlas
Homologous match to J5_8P9A_011
Geometric discrepancy: 0.0413
The information below is about J5_8P9A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_63811.1
Basepair signature
cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

8T2X|1|A1|G|658
8T2X|1|A1|G|659
8T2X|1|A1|A|660
8T2X|1|A1|G|661
8T2X|1|A1|U|662
8T2X|1|A1|C|663
*
8T2X|1|A1|G|799
8T2X|1|A1|G|800
8T2X|1|A1|A|801
8T2X|1|A1|C|802
*
8T2X|1|A1|G|941
8T2X|1|A1|U|942
8T2X|1|A1|U|943
8T2X|1|A1|C|944
*
8T2X|1|A1|G|1375
8T2X|1|A1|C|1376
*
8T2X|1|A1|G|1431
8T2X|1|A1|C|1432
8T2X|1|A1|A|1433
8T2X|1|A1|G|1434
8T2X|1|A1|A|1435
8T2X|1|A1|U|1436
8T2X|1|A1|C|1437

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A4
5.8S ribosomal RNA; 5.8S rRNA
Chain AC
RPL4A isoform 1
Chain AL
60S ribosomal protein L13-A
Chain AN
60S ribosomal protein L15-A
Chain Aa
60S ribosomal protein L28
Chain Ae
RPL32 isoform 1

Coloring options:


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