J5_8T2X_008

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8T2X|1|B5|G|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2X|1|B5|C|31
8T2X|1|B5|U|32
8T2X|1|B5|U|33
8T2X|1|B5|G|34
8T2X|1|B5|U|35
*
8T2X|1|B5|A|473
8T2X|1|B5|A|474
8T2X|1|B5|A|475
8T2X|1|B5|U|476
8T2X|1|B5|A|477
8T2X|1|B5|A|478
8T2X|1|B5|C|479
*
8T2X|1|B5|G|509
8T2X|1|B5|G|510
8T2X|1|B5|A|511
8T2X|1|B5|A|512
8T2X|1|B5|U|513
8T2X|1|B5|G|514
8T2X|1|B5|A|515
8T2X|1|B5|G|516
*
8T2X|1|B5|C|536
8T2X|1|B5|G|537
8T2X|1|B5|A|538
8T2X|1|B5|G|539
8T2X|1|B5|G|540
8T2X|1|B5|A|541
8T2X|1|B5|A|542
8T2X|1|B5|C|543
8T2X|1|B5|A|544
8T2X|1|B5|A|545
8T2X|1|B5|U|546
*
8T2X|1|B5|A|592
8T2X|1|B5|U|593
8T2X|1|B5|A|594
8T2X|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A