J5_8T2Y_002
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8T2Y|1|A1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T2Y_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0362
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8T2Y|1|A1|G|658
8T2Y|1|A1|G|659
8T2Y|1|A1|A|660
8T2Y|1|A1|G|661
8T2Y|1|A1|U|662
8T2Y|1|A1|C|663
*
8T2Y|1|A1|G|799
8T2Y|1|A1|G|800
8T2Y|1|A1|A|801
8T2Y|1|A1|C|802
*
8T2Y|1|A1|G|941
8T2Y|1|A1|U|942
8T2Y|1|A1|U|943
8T2Y|1|A1|C|944
*
8T2Y|1|A1|G|1375
8T2Y|1|A1|C|1376
*
8T2Y|1|A1|G|1431
8T2Y|1|A1|C|1432
8T2Y|1|A1|A|1433
8T2Y|1|A1|G|1434
8T2Y|1|A1|A|1435
8T2Y|1|A1|U|1436
8T2Y|1|A1|C|1437
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- RPL32 isoform 1
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