3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUUC
Length
43 nucleotides
Bulged bases
8T2Z|1|B5|U|134, 8T2Z|1|B5|A|135, 8T2Z|1|B5|C|136, 8T2Z|1|B5|U|137, 8T2Z|1|B5|A|140, 8T2Z|1|B5|U|141, 8T2Z|1|B5|U|178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T2Z|1|B5|G|123
8T2Z|1|B5|A|124
8T2Z|1|B5|U|125
8T2Z|1|B5|A|126
8T2Z|1|B5|G|127
8T2Z|1|B5|U|128
8T2Z|1|B5|U|129
8T2Z|1|B5|C|130
8T2Z|1|B5|C|131
8T2Z|1|B5|U|132
8T2Z|1|B5|U|133
8T2Z|1|B5|U|134
8T2Z|1|B5|A|135
8T2Z|1|B5|C|136
8T2Z|1|B5|U|137
8T2Z|1|B5|A|138
8T2Z|1|B5|C|139
8T2Z|1|B5|A|140
8T2Z|1|B5|U|141
8T2Z|1|B5|G|142
8T2Z|1|B5|G|143
*
8T2Z|1|B5|C|172
8T2Z|1|B5|A|173
8T2Z|1|B5|U|174
8T2Z|1|B5|G|175
8T2Z|1|B5|C|176
8T2Z|1|B5|U|177
8T2Z|1|B5|U|178
8T2Z|1|B5|A|179
8T2Z|1|B5|A|180
8T2Z|1|B5|A|181
8T2Z|1|B5|A|182
*
8T2Z|1|B5|U|203
8T2Z|1|B5|G|204
*
8T2Z|1|B5|C|263
8T2Z|1|B5|G|264
8T2Z|1|B5|A|265
*
8T2Z|1|B5|U|289
8T2Z|1|B5|G|290
8T2Z|1|B5|G|291
8T2Z|1|B5|U|292
8T2Z|1|B5|U|293
8T2Z|1|B5|C|294

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BG
40S ribosomal protein S6-A
Chain BI
40S ribosomal protein S8-A

Coloring options:

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