J5_8T3E_006
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8T3E|1|A1|G|2418, 8T3E|1|A1|A|2799, 8T3E|1|A1|G|2800, 8T3E|1|A1|A|2801, 8T3E|1|A1|A|2802
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T3E_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2937
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8T3E|1|A1|PSU|2416
8T3E|1|A1|U|2417
8T3E|1|A1|G|2418
8T3E|1|A1|A|2419
*
8T3E|1|A1|U|2611
8T3E|1|A1|U|2612
8T3E|1|A1|U|2613
8T3E|1|A1|G|2614
*
8T3E|1|A1|C|2627
8T3E|1|A1|A|2628
*
8T3E|1|A1|U|2650
8T3E|1|A1|G|2651
*
8T3E|1|A1|C|2798
8T3E|1|A1|A|2799
8T3E|1|A1|G|2800
8T3E|1|A1|A|2801
8T3E|1|A1|A|2802
8T3E|1|A1|A|2803
8T3E|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: