J5_8T3E_008

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|B5|C|31
8T3E|1|B5|U|32
8T3E|1|B5|U|33
8T3E|1|B5|G|34
8T3E|1|B5|U|35
*
8T3E|1|B5|A|473
8T3E|1|B5|A|474
8T3E|1|B5|A|475
8T3E|1|B5|U|476
8T3E|1|B5|A|477
8T3E|1|B5|A|478
8T3E|1|B5|C|479
*
8T3E|1|B5|G|509
8T3E|1|B5|G|510
8T3E|1|B5|A|511
8T3E|1|B5|A|512
8T3E|1|B5|U|513
8T3E|1|B5|G|514
8T3E|1|B5|A|515
8T3E|1|B5|G|516
*
8T3E|1|B5|C|536
8T3E|1|B5|G|537
8T3E|1|B5|A|538
8T3E|1|B5|G|539
8T3E|1|B5|G|540
8T3E|1|B5|A|541
8T3E|1|B5|A|542
8T3E|1|B5|C|543
8T3E|1|B5|A|544
8T3E|1|B5|A|545
8T3E|1|B5|U|546
*
8T3E|1|B5|A|592
8T3E|1|B5|U|593
8T3E|1|B5|A|594
8T3E|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A