J5_8T3F_012
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- AACUUUG*UUUCCUUCUG*CAGGACUUU*AUAGAAUAGGA*UAAUGAUU
- Length
- 45 nucleotides
- Bulged bases
- 8T3F|1|B5|U|694, 8T3F|1|B5|C|696, 8T3F|1|B5|C|697, 8T3F|1|B5|U|698, 8T3F|1|B5|G|739, 8T3F|1|B5|C|741, 8T3F|1|B5|U|742, 8T3F|1|B5|U|813, 8T3F|1|B5|G|815, 8T3F|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3F|1|B5|A|635
8T3F|1|B5|A|636
8T3F|1|B5|C|637
8T3F|1|B5|U|638
8T3F|1|B5|U|639
8T3F|1|B5|U|640
8T3F|1|B5|G|641
*
8T3F|1|B5|U|693
8T3F|1|B5|U|694
8T3F|1|B5|U|695
8T3F|1|B5|C|696
8T3F|1|B5|C|697
8T3F|1|B5|U|698
8T3F|1|B5|U|699
8T3F|1|B5|C|700
8T3F|1|B5|U|701
8T3F|1|B5|G|702
*
8T3F|1|B5|C|736
8T3F|1|B5|A|737
8T3F|1|B5|G|738
8T3F|1|B5|G|739
8T3F|1|B5|A|740
8T3F|1|B5|C|741
8T3F|1|B5|U|742
8T3F|1|B5|U|743
8T3F|1|B5|U|744
*
8T3F|1|B5|A|807
8T3F|1|B5|U|808
8T3F|1|B5|A|809
8T3F|1|B5|G|810
8T3F|1|B5|A|811
8T3F|1|B5|A|812
8T3F|1|B5|U|813
8T3F|1|B5|A|814
8T3F|1|B5|G|815
8T3F|1|B5|G|816
8T3F|1|B5|A|817
*
8T3F|1|B5|U|854
8T3F|1|B5|A|855
8T3F|1|B5|A|856
8T3F|1|B5|U|857
8T3F|1|B5|G|858
8T3F|1|B5|A|859
8T3F|1|B5|U|860
8T3F|1|B5|U|861
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
Coloring options: