J5_8T4S_002

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|C|30
8T4S|1|2|U|31
8T4S|1|2|U|32
8T4S|1|2|G|33
8T4S|1|2|U|34
*
8T4S|1|2|A|521
8T4S|1|2|A|522
8T4S|1|2|A|523
8T4S|1|2|U|524
8T4S|1|2|A|525
8T4S|1|2|A|526
8T4S|1|2|C|527
*
8T4S|1|2|G|558
8T4S|1|2|G|559
8T4S|1|2|A|560
8T4S|1|2|A|561
8T4S|1|2|U|562
8T4S|1|2|G|563
8T4S|1|2|A|564
8T4S|1|2|G|565
*
8T4S|1|2|C|585
8T4S|1|2|G|586
8T4S|1|2|A|587
8T4S|1|2|G|588
8T4S|1|2|G|589
8T4S|1|2|A|590
8T4S|1|2|U|591
8T4S|1|2|C|592
8T4S|1|2|C|593
8T4S|1|2|A|594
8T4S|1|2|U|595
*
8T4S|1|2|A|641
8T4S|1|2|U|642
8T4S|1|2|A|643
8T4S|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

FAU ubiquitin-like and ribosomal protein S30