J5_8T4S_004

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

8T4S|1|2|G|126, 8T4S|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|G|123
8T4S|1|2|U|124
8T4S|1|2|C|125
8T4S|1|2|G|126
8T4S|1|2|C|127
8T4S|1|2|U|128
8T4S|1|2|C|129
8T4S|1|2|G|130
*
8T4S|1|2|C|182
8T4S|1|2|G|183
8T4S|1|2|G|184
8T4S|1|2|G|185
*
8T4S|1|2|U|214
8T4S|1|2|G|215
*
8T4S|1|2|C|310
8T4S|1|2|C|311
8T4S|1|2|G|312
*
8T4S|1|2|C|337
8T4S|1|2|G|338
8T4S|1|2|A|339
8T4S|1|2|C|340
8T4S|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8