J5_8T5D_001

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8T5D|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T5D_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0676

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8T5D|1|B|C|47
8T5D|1|B|G|48
8T5D|1|B|A|49
8T5D|1|B|U|50
8T5D|1|B|G|51
8T5D|1|B|A|52
8T5D|1|B|A|53
8T5D|1|B|G|54
*
8T5D|1|B|C|116
8T5D|1|B|G|117
8T5D|1|B|A|118
8T5D|1|B|A|119
8T5D|1|B|U|120
8T5D|1|B|G|121
*
8T5D|1|B|C|130
8T5D|1|B|A|131
*
8T5D|1|B|U|148
8T5D|1|B|A|149
8T5D|1|B|U|150
*
8T5D|1|B|A|176
8T5D|1|B|G|177
8T5D|1|B|G|178

Current chains

Chain B

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34