J5_8T8C_014

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8T8C|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|2A|C|601
8T8C|1|2A|G|602
8T8C|1|2A|A|603
8T8C|1|2A|G|604
*
8T8C|1|2A|C|624
8T8C|1|2A|G|625
8T8C|1|2A|U|626
8T8C|1|2A|A|627
8T8C|1|2A|G|628
*
8T8C|1|2A|C|635
8T8C|1|2A|G|636
8T8C|1|2A|A|637
8T8C|1|2A|G|638
*
8T8C|1|2A|C|650
8T8C|1|2A|G|651
8T8C|1|2A|C|652
8T8C|1|2A|A|652|||A
8T8C|1|2A|A|652|||B
8T8C|1|2A|G|652|||C
*
8T8C|1|2A|C|652|||V
8T8C|1|2A|A|653
8T8C|1|2A|A|654
8T8C|1|2A|A|655
8T8C|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15