J5_8T8C_015

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8T8C|1|2A|G|1758, 8T8C|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T8C_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0651

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8T8C|1|2A|G|1674
8T8C|1|2A|C|1675
8T8C|1|2A|A|1676
8T8C|1|2A|A|1677
8T8C|1|2A|G|1678
8T8C|1|2A|U|1679
8T8C|1|2A|U|1680
8T8C|1|2A|G|1681
8T8C|1|2A|G|1682
*
8T8C|1|2A|U|1706
8T8C|1|2A|G|1707
*
8T8C|1|2A|C|1751
8T8C|1|2A|C|1752
*
8T8C|1|2A|G|1756
8T8C|1|2A|U|1757
8T8C|1|2A|G|1758
8T8C|1|2A|A|1759
8T8C|1|2A|A|1760
8T8C|1|2A|C|1761
8T8C|1|2A|A|1762
8T8C|1|2A|G|1763
8T8C|1|2A|G|1764
*
8T8C|1|2A|C|1988
8T8C|1|2A|G|1989
8T8C|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA