J5_8UD6_014

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8UD6|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD6|1|2A|C|601
8UD6|1|2A|G|602
8UD6|1|2A|A|603
8UD6|1|2A|G|604
*
8UD6|1|2A|C|624
8UD6|1|2A|G|625
8UD6|1|2A|U|626
8UD6|1|2A|A|627
8UD6|1|2A|G|628
*
8UD6|1|2A|C|635
8UD6|1|2A|G|636
8UD6|1|2A|A|637
8UD6|1|2A|G|638
*
8UD6|1|2A|C|650
8UD6|1|2A|G|651
8UD6|1|2A|C|652
8UD6|1|2A|A|652|||A
8UD6|1|2A|A|652|||B
8UD6|1|2A|G|652|||C
*
8UD6|1|2A|C|652|||V
8UD6|1|2A|A|653
8UD6|1|2A|A|654
8UD6|1|2A|A|655
8UD6|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15