J5_8UD6_015

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8UD6|1|2A|G|1758, 8UD6|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UD6_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.066

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UD6|1|2A|G|1674
8UD6|1|2A|C|1675
8UD6|1|2A|A|1676
8UD6|1|2A|A|1677
8UD6|1|2A|G|1678
8UD6|1|2A|U|1679
8UD6|1|2A|U|1680
8UD6|1|2A|G|1681
8UD6|1|2A|G|1682
*
8UD6|1|2A|U|1706
8UD6|1|2A|G|1707
*
8UD6|1|2A|C|1751
8UD6|1|2A|C|1752
*
8UD6|1|2A|G|1756
8UD6|1|2A|U|1757
8UD6|1|2A|G|1758
8UD6|1|2A|A|1759
8UD6|1|2A|A|1760
8UD6|1|2A|C|1761
8UD6|1|2A|A|1762
8UD6|1|2A|G|1763
8UD6|1|2A|G|1764
*
8UD6|1|2A|C|1988
8UD6|1|2A|G|1989
8UD6|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA