J5_8UD8_002

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8UD8|1|1A|U|272|||A, 8UD8|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD8|1|1A|C|268
8UD8|1|1A|U|269
8UD8|1|1A|A|270
8UD8|1|1A|A|271
8UD8|1|1A|A|271|||A
8UD8|1|1A|C|271|||B
*
8UD8|1|1A|G|271|||V
8UD8|1|1A|G|271|||W
8UD8|1|1A|G|271|||X
8UD8|1|1A|U|271|||Y
8UD8|1|1A|C|271|||Z
8UD8|1|1A|G|272
8UD8|1|1A|U|272|||A
8UD8|1|1A|G|272|||B
*
8UD8|1|1A|C|366
8UD8|1|1A|G|370
8UD8|1|1A|A|371
8UD8|1|1A|G|372
8UD8|1|1A|U|373
8UD8|1|1A|A|374
8UD8|1|1A|C|375
*
8UD8|1|1A|G|399
8UD8|1|1A|G|400
8UD8|1|1A|A|401
8UD8|1|1A|A|402
8UD8|1|1A|U|403
8UD8|1|1A|C|404
8UD8|1|1A|U|405
8UD8|1|1A|G|406
*
8UD8|1|1A|U|421
8UD8|1|1A|A|422
8UD8|1|1A|A|423
8UD8|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9